Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2702Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (376 aa)    
Predicted Functional Partners:
PP_1737
Homologs of previously reported genes of unknown function.
   
 
 0.593
vacJ
VacJ lipoprotein.
   
 
 0.593
oprF
Outer membrane porin F.
   
 0.540
PP_0525
TonB-dependent receptor, B12 family.
    
 
 0.502
PP_2663
Homologs of previously reported genes of unknown function.
  
    0.482
PP_1738
Homologs of previously reported genes of unknown function.
   
 
 0.462
PP_3126
Putative polysaccharide exported protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.422
PP_1579
Homologs of previously reported genes of unknown function.
    
   0.403
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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