Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_2709Putative Long-chain-fatty-acid--CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (489 aa)    
Predicted Functional Partners:
PP_2710
Homologs of previously reported genes of unknown function.
  
 0.999
PP_2708
Homologs of previously reported genes of unknown function.
   
 0.994
PP_2711
Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.993
PP_2712
Homologs of previously reported genes of unknown function.
 
     0.968
PP_2714
Sensor histidine kinase.
 
    0.841
PP_4164
Alpha/beta hydrolase.
   
 
 0.787
PP_4165
Homologs of previously reported genes of unknown function.
   
 
 0.786
PP_2713
DNA-binding response regulator.
       0.776
ureC
Urease subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
   
  
 0.659
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
      
 0.655
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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