Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_2714Sensor histidine kinase. (454 aa)    
Predicted Functional Partners:
PP_2713
DNA-binding response regulator.
 0.996
qseB
Two component system DNA-binding transcriptional activator QseB; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 0.985
kdpE
Two-component system DNA-binding response activator KdpE; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 0.974
PP_4224
Sensor histidine kinase.
  
  
 
0.925
PP_2708
Homologs of previously reported genes of unknown function.
 
     0.859
PP_2710
Homologs of previously reported genes of unknown function.
 
    0.857
PP_2712
Homologs of previously reported genes of unknown function.
 
     0.855
PP_2711
Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.852
PP_2709
Putative Long-chain-fatty-acid--CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.841
tctD
Transcriptional regulatory protein tctD.
 
 
 0.815
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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