STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2729Homologs of previously reported genes of unknown function. (178 aa)    
Predicted Functional Partners:
PP_2730
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.968
PP_2731
Homologs of previously reported genes of unknown function.
 
    0.868
PP_2732
Homologs of previously reported genes of unknown function.
 
     0.821
PP_2738
Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.705
PP_2727
Putative C-factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.673
PP_2736
Homologs of previously reported genes of unknown function.
 
     0.628
PP_2737
Oxidoreductase, short-chain dehydrogenase/reductase family.
 
    0.594
PP_2735
Homologs of previously reported genes of unknown function.
 
     0.571
PP_2728
Homologs of previously reported genes of unknown function.
       0.518
yafJ
Putative amidotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
    0.450
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.