STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfaCyclopropane-fatty-acyl-phospholipid synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fatty acid and phospholipid metabolism. (395 aa)    
Predicted Functional Partners:
PP_2735
Homologs of previously reported genes of unknown function.
  
 0.992
PP_2736
Homologs of previously reported genes of unknown function.
  
 0.992
PP_2733
Homologs of previously reported genes of unknown function.
 
    0.906
PP_2738
Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.878
PP_2737
Oxidoreductase, short-chain dehydrogenase/reductase family.
 
  
 0.856
PP_1165
Homologs of previously reported genes of unknown function.
   
  
 0.671
PP_2730
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.651
def-I
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
     
 0.541
PP_2744
Ribose-phosphate pyrophosphokinase family protein.
   
  
 0.520
lepB
Signal peptidase I; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Transport and binding proteins; Belongs to the peptidase S26 family.
     
 0.518
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.