Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_2740Transcriptional regulator, MerR family. (295 aa)    
Predicted Functional Partners:
PP_2739
Putative Sensory box protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 
 0.959
PP_2735
Homologs of previously reported genes of unknown function.
     
 0.919
PP_2733
Homologs of previously reported genes of unknown function.
     
 0.912
PP_2738
Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.903
PP_2736
Homologs of previously reported genes of unknown function.
     
 0.888
PP_2737
Oxidoreductase, short-chain dehydrogenase/reductase family.
 
   
 0.882
PP_2732
Homologs of previously reported genes of unknown function.
     
 0.871
czcR-II
Response regulator; Function experimentally demonstrated in the studied genus; regulator; Biologicalprocesses : Control.
    
 
 0.720
czcR-III
Response regulator; Function of strongly homologous gene; regulator; Biologicalprocesses : Control.
    
 
 0.720
czcC
Metal RND efflux outer membrane protein, CzcC family; Function experimentally demonstrated in the studied genus; factor; Biologicalprocesses : Excrete.
      
 0.710
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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