STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2742Homologs of previously reported genes of unknown function. (119 aa)    
Predicted Functional Partners:
PP_2743
Acetyltransferase, GNAT family.
       0.773
PP_2741
Homologs of previously reported genes of unknown function.
  
    0.582
PP_2587
LuxR family transcriptional regulator.
  
    0.496
PP_3717
Transcriptional regulator, LuxR family.
  
    0.495
PP_5538
Putative ABC transporter, substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
     0.489
PP_2669
Putative Outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.487
gbcA
Putative glycine-betaine dioxygenase subunit; Function experimentally demonstrated in the studied genus; putative enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
    0.461
PP_3411
Homologs of previously reported genes of unknown function.
  
     0.460
PP_2666
Homologs of previously reported genes of unknown function.
  
     0.448
PP_2744
Ribose-phosphate pyrophosphokinase family protein.
       0.447
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.