Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_2745Universal stress protein family. (298 aa)    
Predicted Functional Partners:
PP_0973
Nucleoid-associated protein PP_0973.
  
     0.573
oprG
Outer membrane protein OprG.
 
  
 0.547
PP_2744
Ribose-phosphate pyrophosphokinase family protein.
       0.533
sdhE
Conserved protein of unknown function, DUF339 family; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinyl [...]
  
     0.515
adhP
Short-chain alcohol dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Anaerobic.
   
    0.452
PP_1775
Metallo-beta-lactamase family protein.
  
    0.451
PP_3291
Metallo-beta-lactamase family protein.
  
    0.451
ygiF
Putative thiamine triphosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Purines, pyrimidines, nucleosides, and nucleotides.
  
     0.444
htrG
Putative signal transduction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.443
yhiI
Putative translation-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Transport and binding proteins.
   
  
 0.426
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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