STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2752Homologs of previously reported genes of unknown function. (444 aa)    
Predicted Functional Partners:
PP_2750
Putative Branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.938
PP_2749
Putative Branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.918
PP_2770
Homologs of previously reported genes of unknown function.
  
 
 
0.902
PP_0619
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein.
     
  0.900
livK
Branched-chain amino acids ABC transporter - periplasmic leucine binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Pyruvate family.
     
  0.900
PP_4867
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like); Function of strongly homologous gene; transporter; Transport and binding proteins.
     
  0.900
PP_2748
Putative Branched-chain amino acid ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.897
PP_2769
Putative Branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.894
PP_2747
Homologs of previously reported genes of unknown function.
 
    0.879
PP_2768
Putative Branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.862
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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