Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_2754Putative OprD family outer membrane porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transportandbindingproteins : Porins. (449 aa)    
Predicted Functional Partners:
algK
Alginate biosynthesis protein AlgK; May be involved in the polymerization of mannuronate to alginate.
  
    0.538
PP_0886
Homologs of previously reported genes of unknown function.
  
     0.486
PP_1549
Transcriptional regulator, Cro/CI family.
  
     0.470
PP_1523
Homologs of previously reported genes of unknown function.
  
     0.449
sfnB
Sulfur acquisition oxidoreductase, SfnB family; Function experimentally demonstrated in the studied genus; enzyme; Cellular processes.
  
    0.446
PP_3404
Homologs of previously reported genes of unknown function.
  
     0.440
PP_0938
Homologs of previously reported genes of unknown function.
  
     0.438
PP_2758
Putative Ribose ABC transporter, periplasmic ribose-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.438
PP_1126
Putative Hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.437
PP_1756
Homologs of previously reported genes of unknown function.
  
     0.433
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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