Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sfnBSulfur acquisition oxidoreductase, SfnB family; Function experimentally demonstrated in the studied genus; enzyme; Cellular processes. (414 aa)    
Predicted Functional Partners:
dmoA-I
Dimethyl-sulfide monooxygenase; Function of strongly homologous gene; enzyme; Central intermediary metabolism.
 
    0.800
PP_2765
Putative Sulfonate monooxygenase MsuD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.786
PP_2756
Homologs of previously reported genes of unknown function.
  
    0.771
rbsA-II
Ribose ABC transporter - ATP-binding subunit; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
    0.771
PP_3725
Putative Acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.767
PP_2758
Putative Ribose ABC transporter, periplasmic ribose-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.765
PP_2760
Putative ribose transport permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
    0.765
PP_2757
Putative Sugar-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.762
PP_2761
Putative Ribose ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family.
       0.762
PP_0222
Monooxygenase, DszA family.
 
    0.761
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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