STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2786Homologs of previously reported genes of unknown function. (278 aa)    
Predicted Functional Partners:
PP_2787
Putative Transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.942
PP_2785
Homologs of previously reported genes of unknown function.
 
  
 0.914
PP_2782
Pyridoxalphosphate dependent aminotransferase, class III.
  
    0.650
PP_2783
3-oxoacyl-(Acyl-carrier-protein) reductase.
  
    0.616
PP_2784
Oxidoreductase, short-chain dehydrogenase/reductase family.
       0.613
PP_2778
3-oxoacyl-(Acyl-carrier-protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
  
 0.562
PP_2777
Putative Acyl carrier protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.552
PP_2781
Putative beta-ketoacyl synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
  
 0.545
PP_2779
Putative Beta-ketoacyl synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.536
PP_2780
3-oxoacyl-(Acyl-carrier-protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.536
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.