Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_2787Putative Transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (869 aa)    
Predicted Functional Partners:
PP_2782
Pyridoxalphosphate dependent aminotransferase, class III.
     
 0.985
PP_2777
Putative Acyl carrier protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.983
PP_2781
Putative beta-ketoacyl synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.983
PP_2786
Homologs of previously reported genes of unknown function.
  
 0.942
PP_2785
Homologs of previously reported genes of unknown function.
 
  
 0.865
PP_2813
BNR domain protein.
 
    0.681
PP_3201
BNR domain protein.
 
    0.660
PP_2018
BNR domain protein.
 
    0.656
PP_2043
Homologs of previously reported genes of unknown function.
 
    0.582
PP_2810
Homologs of previously reported genes of unknown function.
 
    0.575
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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