Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2792Homologs of previously reported genes of unknown function. (118 aa)    
Predicted Functional Partners:
PP_2791
Aminoglycoside phosphotransferase.
  
 
 0.994
PP_2794
Oxidoreductase, short chain dehydrogenase/reductase family.
  
 
 0.970
PP_2795
AMP-binding domain protein.
  
 
 0.960
PP_2790
Sigma-54 dependent sensory box protein.
     
 0.935
PP_2793
Acyl-CoA dehydrogenase family protein.
     
 0.820
actP-II
Acetate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Carbohydrates, organic alcohols, and acids; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     
 0.537
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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