Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nfxBHTH-type transcriptional regulator nfxB. (185 aa)    
Predicted Functional Partners:
oprJ
Outer membrane protein OprJ.
   
  
 0.911
mexT
Transcriptional regulator MexT; Belongs to the LysR transcriptional regulatory family.
  
 
 0.849
mexC
Multidrug efflux RND membrane fusion protein MexC; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.838
mexD
Multidrug efflux RND transporter MexD.
  
  
 0.824
oprN
Multidrug efflux RND outer membrane protein OprN.
   
  
 0.773
dacB
D-alanyl-D-alanine carboxypeptidase.
   
  
 0.770
ampD
N-acetyl-anhydromuramyl-L-alanine-amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Regulatory functions.
      
 0.768
ampC
Beta-lactamase.
   
  
 0.766
mexB
Multidrug resistance protein MexB.
  
  
 0.715
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
      
 0.674
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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