STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mexTTranscriptional regulator MexT; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
oprN
Multidrug efflux RND outer membrane protein OprN.
  
  
 0.931
PP_2827
Alcohol dehydrogenase, zinc-containing.
  
  
 0.867
nfxB
HTH-type transcriptional regulator nfxB.
  
 
 0.865
oprJ
Outer membrane protein OprJ.
   
  
 0.842
ampD
N-acetyl-anhydromuramyl-L-alanine-amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Regulatory functions.
      
 0.782
mexF
Multidrug efflux RND transporter MexF.
  
  
 0.731
mexB
Multidrug resistance protein MexB.
      
 0.672
PP_2825
Putative Integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
  
    0.670
PP_3425
Efflux transporter RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.654
dacB
D-alanyl-D-alanine carboxypeptidase.
      
 0.649
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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