Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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PP_2835Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Scavenge (Catabolism); Belongs to the LDH2/MDH2 oxidoreductase family. (344 aa)    
Predicted Functional Partners:
PP_2836
Putative 2-keto-3-deoxyxylonate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Sugars.
 
    0.853
PP_2834
Putative D-galactarate dehydratase/Altronate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Sugars.
 
   
 0.771
yfeH
Putative osmotic pressure-regulated transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Cell envelope.
  
    0.739
PP_2837
Putative uronate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.530
PP_0308
Putative dipeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.492
PP_2693
Putative Dipeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.492
pvdM
Putative dipeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
  
    0.492
fucD
L-fuconate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Pentose phosphate pathway; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.483
PP_2833
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.463
GbpR
Galactose-binding protein regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.439
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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