STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2859Homologs of previously reported genes of unknown function. (189 aa)    
Predicted Functional Partners:
PP_2860
Putative Nicotinamide mononucleotide transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.959
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.605
PP_2863
Homologs of previously reported genes of unknown function.
  
    0.600
cobB-2
Deacetylase of acetyl-CoA synthetase, NAD-dependent; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily.
   
    0.564
PP_4995
Putative protein possibly involved in the control of exopolysaccharide production; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Biologicalprocesses : Control; Belongs to the UPF0301 (AlgH) family.
   
    0.473
PP_1357
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.472
nadA
Quinolinate synthase [4Fe-4S] cluster subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily.
      
 0.441
PP_1979
Putative Hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.433
mcpP
Methyl-accepting chemotaxis transducer; Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of methylation. McpP is a chemoreceptor that responds specifically to some C2 and C3 carboxylic acids. Recognizes acetate, pyruvate, propionate, and L-lactate.
       0.433
PP_2858
Homologs of previously reported genes of unknown function.
  
    0.422
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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