STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PP_2882Putative 2-hydroxychromene-2-carboxylate isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (204 aa)    
Predicted Functional Partners:
PP_2881
Oxidoreductase, short chain dehydrogenase/reductase family.
 
     0.882
PP_2880
Transcriptional regulator, TetR family.
 
     0.598
yheS
Putative of ABC superfamily informational factor: ATP-binding components; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process; Transport and binding proteins.
      
 0.584
uup
DNA-binding ATPase involved in replication; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Transport and binding proteins.
      
 0.584
elaA
Putative acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
      
 0.584
gpD
Pyocin R2_PP, tail formation.
      
 0.575
PP_3066
Pyocin R2_PP, lytic enzyme.
      
 0.575
PP_3205
Fumarylacetoacetate hydrolase family protein.
      
 0.552
PP_2879
Homologs of previously reported genes of unknown function.
  
    0.515
PP_1709
Fumarylacetoacetate hydrolase family protein.
      
 0.484
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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