STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2884XRE family transcriptional regulator. (181 aa)    
Predicted Functional Partners:
PP_2883
Homologs of previously reported genes of unknown function.
       0.773
PP_2245
Transcriptional regulator, Cro/CI family.
  
  
 0.696
PP_2885
Putative Transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.554
spuA
Glutamine amidotransferase; Function experimentally demonstrated in the studied genus; enzyme; Purines, pyrimidines, nucleosides, and nucleotides.
 
  
 0.498
PP_5298
Putative glutamine amidotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Amino acids and amines.
 
  
 0.495
PP_3598
Peptidase C26.
 
  
 0.491
PP_3125
Putative transcriptional regulator (Cro/CI family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
0.470
pheA
Chorismate mutase/Prephenate dehydratase; Function of strongly homologous gene; enzyme.
  
  
 0.468
PP_2886
Putative Cytochrome b561; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.462
cobB-2
Deacetylase of acetyl-CoA synthetase, NAD-dependent; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily.
  
    0.452
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.