STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2884XRE family transcriptional regulator. (181 aa)    
Predicted Functional Partners:
PP_2883
Homologs of previously reported genes of unknown function.
       0.773
PP_2245
Transcriptional regulator, Cro/CI family.
  
  
 0.698
PP_2885
Putative Transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.559
guaA
Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.498
spuA
Glutamine amidotransferase; Function experimentally demonstrated in the studied genus; enzyme; Purines, pyrimidines, nucleosides, and nucleotides.
 
  
 0.465
PP_5298
Putative glutamine amidotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Amino acids and amines.
 
  
 0.462
PP_3598
Peptidase C26.
 
  
 0.457
PP_3125
Putative transcriptional regulator (Cro/CI family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
0.454
PP_2886
Putative Cytochrome b561; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.447
PP_2887
Catalase-related peroxidase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
  
    0.443
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.