STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treSATrehalose synthase A; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Sugars. (688 aa)    
Predicted Functional Partners:
treSB
Fused trehalose synthase B/maltokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Biosynthesis and degradation of polysaccharides.
  
 
 0.896
PP_1749
GNAT family acetyltransferase; Function experimentally demonstrated in the studied genus; enzyme; Central intermediary metabolism.
   
  
 0.840
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
 0.805
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.801
asnB
Asparagine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
  
 0.758
ygaU
Regulator of murein cross-linking; Function of homologous gene experimentally demonstrated in an other organism; regulator; Unknown function.
   
  
 0.685
PP_3138
VirK domain protein.
      
 0.649
PP_2634
Putative Cellulose synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.645
PP_3135
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.634
PP_5297
Putative Amino acid transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.631
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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