STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2919Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
PP_2921
Homologs of previously reported genes of unknown function.
 
     0.817
PP_3227
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.727
PP_2194
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.723
PP_4464
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.716
PP_4601
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.710
PP_4494
Putative LysR-type transcriptional activator protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the LysR transcriptional regulatory family.
  
     0.700
PP_4460
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.682
PP_2833
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.679
ybgL
Putative nitrogen-containing compound degradation enzyme; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
    0.630
PP_2922
Urea amidolyase-related protein.
 
     0.630
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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