Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_2931Homologs of previously reported genes of unknown function; Unknown function. (234 aa)    
Predicted Functional Partners:
PP_2930
Putative L-serine dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.811
PP_3192
Homologs of previously reported genes of unknown function.
  
    0.763
PP_2932
Amidase family protein.
       0.613
nspC
Carboxynorspermidine/carboxyspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
       0.453
tusD
Sulfur transfer protein complex, TusD subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Centralintermediarymetabolism : Sulfur metabolism.
  
  
 0.453
PP_3995
Homologs of previously reported genes of unknown function.
     
 0.444
PP_3994
Putative tRNA 5-methylaminomethyl-2-thiouridine synthase (tusC-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Centralintermediarymetabolism : Sulfur metabolism; Belongs to the DsrF/TusC family.
  
  
 0.418
PP_2928
Saccharopine dehydrogenase.
       0.402
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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