STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2931Homologs of previously reported genes of unknown function; Unknown function. (234 aa)    
Predicted Functional Partners:
PP_2930
Putative L-serine dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.813
PP_3192
Homologs of previously reported genes of unknown function.
  
    0.765
PP_2932
Amidase family protein.
  
    0.613
PP_2247
Putative Endoribonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.487
ridA
Aminoacrylate/iminopropionate hydrolase/deaminase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.474
PP_3496
Endoribonuclease L-PSP.
 
  
 0.457
nspC
Carboxynorspermidine/carboxyspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
       0.453
PP_2928
Saccharopine dehydrogenase.
       0.402
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.