STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2952Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
PP_3369
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.743
PP_5300
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.721
PP_0055
Transcriptional regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.715
PP_2390
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.601
PP_0698
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.573
PP_2953
Alcohol dehydrogenase, zinc-containing; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
       0.572
PP_3974
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.571
PP_4668
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.532
PP_2951
Transcriptional regulator, TetR family.
   
   0.529
trpI
HTH-type transcriptional regulator TrpI; Belongs to the LysR transcriptional regulatory family.
  
     0.523
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.