STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2964Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1004 aa)    
Predicted Functional Partners:
PP_2971
Transposase; Function of strongly homologous gene; extrachromosomal origin; Mobileandextrachromosomalelementfunctions : Transposon functions.
  
  
 0.852
PP_5407
Transposition protein, TnsD-related protein.
   
  
 0.837
PP_2984
Homologs of previously reported genes of unknown function.
      
 0.836
PP_5404
Transposition protein, TnsC-related protein.
      
 0.836
PP_0352
RNA polymerase sigma-70 factor, ECF subfamily.
      
 0.835
tnpC
Putative tnpA repressor TnpC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.795
PP_1532
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
     
 0.746
tnpT-I
Putative cointegrate resolution protein T Tn4652; Function experimentally demonstrated in the studied strain; enzyme; Mobileandextrachromosomalelementfunctions : Transposon functions.
  
  
 0.708
tnpT-II
Putative cointegrate resolution protein T Tn4652; Function experimentally demonstrated in the studied strain; enzyme; Mobileandextrachromosomalelementfunctions : Transposon functions.
  
  
 0.706
PP_5173
RND efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
  
 0.650
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.