STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2978Homologs of previously reported genes of unknown function. (133 aa)    
Predicted Functional Partners:
PP_2331
Homologs of previously reported genes of unknown function.
 
    0.797
PP_2330
Homologs of previously reported genes of unknown function.
 
     0.787
PP_2976
Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.533
PP_1325
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
   
 0.505
PP_5038
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
    0.478
tnpB
Tn4652, transposase subunit B; Function experimentally demonstrated in the studied strain; enzyme; Mobileandextrachromosomalelementfunctions : Transposon functions.
  
    0.466
PP_0679
Homologs of previously reported genes of unknown function.
  
    0.405
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.