Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2979Homologs of previously reported genes of unknown function. (142 aa)    
Predicted Functional Partners:
PP_2980
Homologs of previously reported genes of unknown function.
  
    0.780
PP_2540
Oxidoreductase, short-chain dehydrogenase/reductase family.
      
 0.634
PP_3491
Enoly-coenzyme A hydratase/isomerase family protein.
      
 0.634
PP_3726
Enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
      
 0.634
PP_3925
Homologs of previously reported genes of unknown function.
      
 0.634
PP_4817
MaoC domain protein.
     
 0.600
PP_0580
MaoC domain protein.
      
 0.550
PP_4552
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.540
tnpS
Putative cointegrate resolution protein S; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
       0.441
PP_0581
3-oxoacyl-(Acyl-carrier-protein) reductase.
      
 0.429
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.