Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tnpSPutative cointegrate resolution protein S; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family. (323 aa)    
Predicted Functional Partners:
tnpC
Putative tnpA repressor TnpC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.961
tnpT-I
Putative cointegrate resolution protein T Tn4652; Function experimentally demonstrated in the studied strain; enzyme; Mobileandextrachromosomalelementfunctions : Transposon functions.
 
  
 0.892
yghU
GSH-dependent disulfide bond oxidoreductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknownfunction : Enzymes of unknown specificity.
      
 0.818
tnpT-II
Putative cointegrate resolution protein T Tn4652; Function experimentally demonstrated in the studied strain; enzyme; Mobileandextrachromosomalelementfunctions : Transposon functions.
 
   
 0.788
pilD
Leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
      
 0.764
pheA
Chorismate mutase/Prephenate dehydratase; Function of strongly homologous gene; enzyme.
      
 0.651
PP_2964
Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.579
PP_0607
Putative Type IV pili biogenesis protein FimT; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.492
PP_2983
Homologs of previously reported genes of unknown function.
       0.453
PP_2984
Homologs of previously reported genes of unknown function.
       0.453
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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