Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3009Homologs of previously reported genes of unknown function. (32 aa)    
Predicted Functional Partners:
PP_3656
Putative Aromatic compound-specific porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.866
PP_4643
Xanthine/uracil permease family protein.
      
 0.865
PP_3420
Sensor histidine kinase.
   
  
 0.857
PP_2810
Homologs of previously reported genes of unknown function.
      
 0.818
argT
Lysine / arginine / ornithine ABC transporter - periplasmic binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
      
 0.763
PP_2809
Homologs of previously reported genes of unknown function.
      
 0.709
PP_2812
Putative Transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.702
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
      
 0.631
PP_3008
Homologs of previously reported genes of unknown function.
  
    0.523
PP_2013
Homologs of previously reported genes of unknown function.
      
 0.469
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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