Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3022Transcriptional regulator, AraC family. (269 aa)    
Predicted Functional Partners:
PP_3021
Transporter, LysE family.
 
     0.760
PP_4511
Transcriptional regulator, AraC family.
  
     0.749
PP_4482
Transcriptional regulator, AraC family.
  
   0.727
PP_3665
AraC family transcriptional regulator; Function of strongly homologous gene; regulator.
  
   0.715
PP_2425
Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.710
PP_1711
Transcriptional regulator, AraC family.
  
     0.676
PP_1395
Transcriptional regulator, AraC family.
  
     0.658
cdhR
HTH-type transcriptional regulator CdhR; Function experimentally demonstrated in the studied genus; regulator; Energymetabolism : Amino acids and amines.
  
   0.651
PP_2651
Major facilitator family transporter.
   
  
 0.557
PP_3520
Homologs of previously reported genes of unknown function.
   
  
 0.549
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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