Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3026Putative Phage recombinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (541 aa)    
Predicted Functional Partners:
PP_3867
Putative Phage tail tube protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.970
gpW
Pyocin R2_PP, baseplate protein.
  
  
 0.894
PP_3877
Homologs of previously reported genes of unknown function.
 
  
 0.625
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
      
 0.531
PP_3025
Transporter, LysE family.
  
    0.519
gpI
Pyocin R2_PP, tail formation protein.
  
    0.491
gpU
Pyocin R2_PP, tail formation protein.
  
    0.488
gpV
Pyocin R2_PP, tail spike protein.
  
    0.434
prtN
Transcription regulatory protein PrtN.
      
 0.425
PP_5743
Putative TonB-dependent receptor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
     0.425
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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