STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prtNTranscription regulatory protein PrtN. (105 aa)    
Predicted Functional Partners:
PP_3849
Putative calcium-binding protein, hemolysin-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; carrier; Cellular processes.
   
  
 0.745
PP_3920
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
   
  
 0.745
hldE
Heptose 7-phosphate kinase/heptose 1-phosphate adenylyltransferase; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.
      
 0.738
PP_1105
Putative DNA ligase, ATP-dependent; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.671
PP_3066
Pyocin R2_PP, lytic enzyme.
      
 0.640
PP_3027
Homologs of previously reported genes of unknown function.
  
    0.621
PP_3029
DNA cytosine methyltransferase family protein.
  
    0.620
PP_3030
Homologs of previously reported genes of unknown function.
  
  
 0.617
PP_3028
Homologs of previously reported genes of unknown function.
  
    0.613
PP_3032
DNA-binding protein Roi-related protein.
  
    0.529
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.