STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3032DNA-binding protein Roi-related protein. (96 aa)    
Predicted Functional Partners:
PP_3900
Hypothetical protein; Homologs of previously reported genes of unknown function.
   
  
 0.821
PP_4530
Homologs of previously reported genes of unknown function.
   
  
 0.816
PP_1199
Toxin-antitoxin system, higB toxin like; Function of strongly homologous gene; enzyme; Cellularprocesses : Toxin production and resistance.
      
 0.815
PP_1268
Putative HtrA suppressor protein sohA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.815
PP_5435
Homologs of previously reported genes of unknown function; Unknown function.
      
 0.815
PP_0770
PemI-like protein.
      
 0.812
PP_5552
Homologs of previously reported genes of unknown function; Unknown function.
       0.773
PP_5553
Homologs of previously reported genes of unknown function; Unknown function.
       0.773
PP_0274
Putative transcriptional regulator containing HTH domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions.
      
 0.768
PP_1586
Putative Killer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.768
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.