STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3038Pyocin R2_PP, traC domain protein. (736 aa)    
Predicted Functional Partners:
PP_5555
Homologs of previously reported genes of unknown function; Unknown function.
       0.832
PP_3039
Homologs of previously reported genes of unknown function.
  
    0.806
PP_3037
C4-type zinc finger protein, DksA/TraR family.
  
    0.777
PP_3036
Homologs of previously reported genes of unknown function.
  
    0.774
PP_3042
Putative Terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.691
PP_3044
Phage portal protein, lambda family.
 
  
 0.674
PP_3047
Homologs of previously reported genes of unknown function.
  
    0.651
PP_5554
Protein of unknown function; Doubtful CDS.
       0.554
PP_3920
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
 
   
 0.440
PP_3059
Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
   
 0.426
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.