Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3038Pyocin R2_PP, traC domain protein. (736 aa)    
Predicted Functional Partners:
PP_5555
Homologs of previously reported genes of unknown function; Unknown function.
       0.874
PP_3039
Homologs of previously reported genes of unknown function.
  
    0.819
PP_3037
C4-type zinc finger protein, DksA/TraR family.
  
    0.775
PP_3036
Homologs of previously reported genes of unknown function.
       0.773
PP_3042
Putative Terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.681
PP_3044
Phage portal protein, lambda family.
 
  
 0.664
PP_3047
Homologs of previously reported genes of unknown function.
  
    0.649
PP_5554
Protein of unknown function; Doubtful CDS.
       0.554
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
     
 0.446
recD
ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA f [...]
       0.444
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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