PP_3040 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PP_3040

Pyocin R2_PP, holin. (115 aa)

Predicted Functional Partners:

PP_3066

0.920

gpJ

0.878

gpW

0.857

PP_3050

0.843

gpV

0.819

PP_1573

0.816

gpD

0.802

gpI

0.772

PP_3059

0.706

PP_3046

0.689

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_1573	PP_3040	PP_1573	PP_3040	Putative Major tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, holin.	0.816
PP_1573	PP_3066	PP_1573	PP_3066	Putative Major tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, lytic enzyme.	0.900
PP_1573	gpD	PP_1573	PP_3065	Putative Major tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, tail formation.	0.439
PP_1573	gpJ	PP_1573	PP_3054	Putative Major tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, baseplate/tail fiber protein.	0.415
PP_3040	PP_1573	PP_3040	PP_1573	Pyocin R2_PP, holin.	Putative Major tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.816
PP_3040	PP_3046	PP_3040	PP_3046	Pyocin R2_PP, holin.	Homologs of previously reported genes of unknown function.	0.689
PP_3040	PP_3050	PP_3040	PP_3050	Pyocin R2_PP, holin.	Homologs of previously reported genes of unknown function.	0.843
PP_3040	PP_3059	PP_3040	PP_3059	Pyocin R2_PP, holin.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.706
PP_3040	PP_3066	PP_3040	PP_3066	Pyocin R2_PP, holin.	Pyocin R2_PP, lytic enzyme.	0.920
PP_3040	gpD	PP_3040	PP_3065	Pyocin R2_PP, holin.	Pyocin R2_PP, tail formation.	0.802
PP_3040	gpI	PP_3040	PP_3055	Pyocin R2_PP, holin.	Pyocin R2_PP, tail formation protein.	0.772
PP_3040	gpJ	PP_3040	PP_3054	Pyocin R2_PP, holin.	Pyocin R2_PP, baseplate/tail fiber protein.	0.878
PP_3040	gpV	PP_3040	PP_3051	Pyocin R2_PP, holin.	Pyocin R2_PP, tail spike protein.	0.819
PP_3040	gpW	PP_3040	PP_3053	Pyocin R2_PP, holin.	Pyocin R2_PP, baseplate protein.	0.857
PP_3046	PP_3040	PP_3046	PP_3040	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, holin.	0.689
PP_3046	PP_3050	PP_3046	PP_3050	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.900
PP_3046	PP_3059	PP_3046	PP_3059	Homologs of previously reported genes of unknown function.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.422
PP_3046	PP_3066	PP_3046	PP_3066	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, lytic enzyme.	0.553
PP_3046	gpD	PP_3046	PP_3065	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail formation.	0.940
PP_3046	gpI	PP_3046	PP_3055	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail formation protein.	0.966