STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3045Putative ClpP protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the peptidase S14 family. (387 aa)    
Predicted Functional Partners:
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
 0.989
PP_3044
Phage portal protein, lambda family.
  
 0.971
PP_3042
Putative Terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.963
PP_1565
Phage portal protein, HK97 family.
 
  
 0.859
PP_3879
Phage portal protein, HK97 family.
 
  
 0.857
PP_3047
Homologs of previously reported genes of unknown function.
 
     0.840
PP_3041
Homologs of previously reported genes of unknown function.
  
    0.826
PP_3046
Homologs of previously reported genes of unknown function.
  
    0.817
PP_3881
Putative Phage terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.799
gpV
Pyocin R2_PP, tail spike protein.
 
   
 0.796
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.