Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3046Homologs of previously reported genes of unknown function. (115 aa)    
Predicted Functional Partners:
gpI
Pyocin R2_PP, tail formation protein.
  
 
 0.966
gpW
Pyocin R2_PP, baseplate protein.
  
 
 0.963
gpD
Pyocin R2_PP, tail formation.
  
 
 0.940
gpV
Pyocin R2_PP, tail spike protein.
  
 
 0.936
gpJ
Pyocin R2_PP, baseplate/tail fiber protein.
  
 
 0.934
PP_3060
Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
  
 
 0.921
PP_3042
Putative Terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.910
PP_3050
Homologs of previously reported genes of unknown function.
  
   0.900
gpU
Pyocin R2_PP, tail formation protein.
  
 
 0.889
PP_3064
Phage tail protein.
  
 
 0.881
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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