Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3049Homologs of previously reported genes of unknown function. (220 aa)    
Predicted Functional Partners:
PP_3050
Homologs of previously reported genes of unknown function.
  
    0.835
PP_3047
Homologs of previously reported genes of unknown function.
       0.834
PP_3048
Homologs of previously reported genes of unknown function.
       0.834
gpV
Pyocin R2_PP, tail spike protein.
       0.820
PP_3044
Phage portal protein, lambda family.
  
    0.786
gpW
Pyocin R2_PP, baseplate protein.
  
    0.724
gpI
Pyocin R2_PP, tail formation protein.
  
    0.721
gpJ
Pyocin R2_PP, baseplate/tail fiber protein.
  
    0.719
PP_3042
Putative Terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.710
PP_3056
Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.689
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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