PP_3050 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene co-occurrence

gene fusions

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[Homology]

Score

PP_3050

Homologs of previously reported genes of unknown function. (176 aa)

Predicted Functional Partners:

gpV

0.994

gpJ

0.987

PP_3059

0.985

gpI

0.980

PP_3060

0.966

gpW

0.962

gpD

0.953

gpU

0.952

PP_3064

0.936

PP_3056

0.928

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_3050	PP_3056	PP_3050	PP_3056	Homologs of previously reported genes of unknown function.	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.928
PP_3050	PP_3059	PP_3050	PP_3059	Homologs of previously reported genes of unknown function.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.985
PP_3050	PP_3060	PP_3050	PP_3060	Homologs of previously reported genes of unknown function.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.966
PP_3050	PP_3064	PP_3050	PP_3064	Homologs of previously reported genes of unknown function.	Phage tail protein.	0.936
PP_3050	gpD	PP_3050	PP_3065	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail formation.	0.953
PP_3050	gpI	PP_3050	PP_3055	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail formation protein.	0.980
PP_3050	gpJ	PP_3050	PP_3054	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, baseplate/tail fiber protein.	0.987
PP_3050	gpU	PP_3050	PP_3063	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail formation protein.	0.952
PP_3050	gpV	PP_3050	PP_3051	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail spike protein.	0.994
PP_3050	gpW	PP_3050	PP_3053	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, baseplate protein.	0.962
PP_3056	PP_3050	PP_3056	PP_3050	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.928
PP_3056	PP_3059	PP_3056	PP_3059	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.880
PP_3056	PP_3060	PP_3056	PP_3060	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.889
PP_3056	PP_3064	PP_3056	PP_3064	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Phage tail protein.	0.870
PP_3056	gpD	PP_3056	PP_3065	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, tail formation.	0.879
PP_3056	gpI	PP_3056	PP_3055	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, tail formation protein.	0.966
PP_3056	gpJ	PP_3056	PP_3054	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, baseplate/tail fiber protein.	0.969
PP_3056	gpU	PP_3056	PP_3063	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, tail formation protein.	0.889
PP_3056	gpV	PP_3056	PP_3051	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, tail spike protein.	0.932
PP_3056	gpW	PP_3056	PP_3053	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, baseplate protein.	0.961