Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3056Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (292 aa)    
Predicted Functional Partners:
gpJ
Pyocin R2_PP, baseplate/tail fiber protein.
  
  
 0.969
gpI
Pyocin R2_PP, tail formation protein.
  
  
 0.966
gpW
Pyocin R2_PP, baseplate protein.
  
  
 0.961
gpV
Pyocin R2_PP, tail spike protein.
  
  
 0.932
PP_3050
Homologs of previously reported genes of unknown function.
  
  
 0.928
PP_3060
Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
  
  
 0.889
gpU
Pyocin R2_PP, tail formation protein.
  
  
 0.889
PP_3059
Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
  
  
 0.880
gpD
Pyocin R2_PP, tail formation.
  
  
 0.879
PP_3046
Homologs of previously reported genes of unknown function.
  
  
 0.875
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.