PP_3061 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PP_3061

Homologs of previously reported genes of unknown function. (98 aa)

Predicted Functional Partners:

PP_3060

0.918

PP_3059

0.912

gpU

0.889

PP_3064

0.875

gpJ

0.871

gpD

0.871

gpI

0.869

gpW

0.861

PP_3056

0.851

gpV

0.847

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_3056	PP_3059	PP_3056	PP_3059	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.877
PP_3056	PP_3060	PP_3056	PP_3060	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.878
PP_3056	PP_3061	PP_3056	PP_3061	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.851
PP_3056	PP_3064	PP_3056	PP_3064	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Phage tail protein.	0.847
PP_3056	gpD	PP_3056	PP_3065	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, tail formation.	0.853
PP_3056	gpI	PP_3056	PP_3055	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, tail formation protein.	0.960
PP_3056	gpJ	PP_3056	PP_3054	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, baseplate/tail fiber protein.	0.959
PP_3056	gpU	PP_3056	PP_3063	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, tail formation protein.	0.875
PP_3056	gpV	PP_3056	PP_3051	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, tail spike protein.	0.931
PP_3056	gpW	PP_3056	PP_3053	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pyocin R2_PP, baseplate protein.	0.950
PP_3059	PP_3056	PP_3059	PP_3056	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Putative Pyocin R2_PP, tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.877
PP_3059	PP_3060	PP_3059	PP_3060	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.998
PP_3059	PP_3061	PP_3059	PP_3061	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Homologs of previously reported genes of unknown function.	0.912
PP_3059	PP_3064	PP_3059	PP_3064	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Phage tail protein.	0.950
PP_3059	gpD	PP_3059	PP_3065	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, tail formation.	0.989
PP_3059	gpI	PP_3059	PP_3055	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, tail formation protein.	0.990
PP_3059	gpJ	PP_3059	PP_3054	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, baseplate/tail fiber protein.	0.988
PP_3059	gpU	PP_3059	PP_3063	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, tail formation protein.	0.989
PP_3059	gpV	PP_3059	PP_3051	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, tail spike protein.	0.981
PP_3059	gpW	PP_3059	PP_3053	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, baseplate protein.	0.992