gpD protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

gpD

Pyocin R2_PP, tail formation. (347 aa)

Predicted Functional Partners:

gpW

0.998

PP_3059

0.989

gpU

0.988

gpV

0.986

gpJ

0.975

gpI

0.975

PP_3060

0.974

PP_3064

0.947

PP_3046

0.912

PP_3062

0.907

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_3046	PP_3059	PP_3046	PP_3059	Homologs of previously reported genes of unknown function.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.434
PP_3046	PP_3060	PP_3046	PP_3060	Homologs of previously reported genes of unknown function.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.921
PP_3046	PP_3064	PP_3046	PP_3064	Homologs of previously reported genes of unknown function.	Phage tail protein.	0.869
PP_3046	gpD	PP_3046	PP_3065	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail formation.	0.912
PP_3046	gpI	PP_3046	PP_3055	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail formation protein.	0.928
PP_3046	gpJ	PP_3046	PP_3054	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, baseplate/tail fiber protein.	0.924
PP_3046	gpU	PP_3046	PP_3063	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail formation protein.	0.878
PP_3046	gpV	PP_3046	PP_3051	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, tail spike protein.	0.929
PP_3046	gpW	PP_3046	PP_3053	Homologs of previously reported genes of unknown function.	Pyocin R2_PP, baseplate protein.	0.962
PP_3059	PP_3046	PP_3059	PP_3046	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Homologs of previously reported genes of unknown function.	0.434
PP_3059	PP_3060	PP_3059	PP_3060	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.998
PP_3059	PP_3062	PP_3059	PP_3062	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Putative Pyocin R2_PP, tail length determination protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.863
PP_3059	PP_3064	PP_3059	PP_3064	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Phage tail protein.	0.950
PP_3059	gpD	PP_3059	PP_3065	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, tail formation.	0.989
PP_3059	gpI	PP_3059	PP_3055	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, tail formation protein.	0.990
PP_3059	gpJ	PP_3059	PP_3054	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, baseplate/tail fiber protein.	0.988
PP_3059	gpU	PP_3059	PP_3063	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, tail formation protein.	0.989
PP_3059	gpV	PP_3059	PP_3051	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, tail spike protein.	0.981
PP_3059	gpW	PP_3059	PP_3053	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Pyocin R2_PP, baseplate protein.	0.992
PP_3060	PP_3046	PP_3060	PP_3046	Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Homologs of previously reported genes of unknown function.	0.921