STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3066Pyocin R2_PP, lytic enzyme. (183 aa)    
Predicted Functional Partners:
gpD
Pyocin R2_PP, tail formation.
 
  
 0.900
PP_3920
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
  
   
 0.855
PP_5556
Putative bacteriophage lysis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin; Mobileandextrachromosomalelementfunctions : Prophage functions.
  
  
 0.847
PP_3026
Putative Phage recombinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.837
PP_3849
Putative calcium-binding protein, hemolysin-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; carrier; Cellular processes.
      
 0.834
gpU
Pyocin R2_PP, tail formation protein.
 
  
 0.813
gpW
Pyocin R2_PP, baseplate protein.
  
  
 0.783
PP_3064
Phage tail protein.
  
  
 0.777
PP_3867
Putative Phage tail tube protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.750
PP_1579
Homologs of previously reported genes of unknown function.
  
    0.720
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.