STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bhbPD-beta-hydroxybutyrate permease; Function of strongly homologous gene; transporter; Transport and binding proteins. (463 aa)    
Predicted Functional Partners:
hbdH
3-hydroxybutyrate dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.888
PP_3420
Sensor histidine kinase.
  
   
 0.857
PP_2810
Homologs of previously reported genes of unknown function.
      
 0.836
PP_2813
BNR domain protein.
      
 0.834
PP_3656
Putative Aromatic compound-specific porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.833
PP_3009
Homologs of previously reported genes of unknown function.
      
 0.832
PP_4643
Xanthine/uracil permease family protein.
   
  
 0.822
PP_3075
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 0.650
atoA
Acetoacetyl CoA-transferase (subunit A); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
    0.609
eco
Ecotin; General inhibitor of family S1 serine proteases.
  
    0.602
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.