STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3090OmpA domain protein. (831 aa)    
Predicted Functional Partners:
PP_5561
Homologs of previously reported genes of unknown function; Unknown function.
 
  
 0.973
vgrG-III
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
 
  
 0.965
vgrG-I
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
 
  
 0.952
vgrG-II
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
 
  
 0.952
PP_3092
Homologs of previously reported genes of unknown function.
 
 
 0.947
puuD
Uricase/urate oxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.945
PP_3093
Homologs of previously reported genes of unknown function.
 
  
 0.944
PP_3094
Homologs of previously reported genes of unknown function.
 
  
 0.942
clpV
Protein ClpV1; Belongs to the ClpA/ClpB family.
 
  
 0.938
PP_3097
Homologs of previously reported genes of unknown function.
 
  
 0.929
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.