STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3092Homologs of previously reported genes of unknown function. (238 aa)    
Predicted Functional Partners:
PP_3093
Homologs of previously reported genes of unknown function.
  
 0.981
PP_3094
Homologs of previously reported genes of unknown function.
 
  
 0.971
PP_5561
Homologs of previously reported genes of unknown function; Unknown function.
 
  
 0.960
puuD
Uricase/urate oxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.959
PP_3097
Homologs of previously reported genes of unknown function.
 
  
 0.957
PP_3098
Homologs of previously reported genes of unknown function.
 
  
 0.954
PP_3100
Homologs of previously reported genes of unknown function.
 
  
 0.953
PP_3090
OmpA domain protein.
 
 
 0.949
clpV
Protein ClpV1; Belongs to the ClpA/ClpB family.
 
  
 0.949
PP_3091
Homologs of previously reported genes of unknown function.
 
 
 0.944
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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