STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3124Putative short chain fatty acid transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (472 aa)    
Predicted Functional Partners:
atoB
Acetoacetyl CoA-transferase (subunit B); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.955
atoC
Two component system AtoC DNA-binding transcriptional activator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Fattyacidandphospholipidmetabolism : Degradation.
      
 0.741
atoA
Acetoacetyl CoA-transferase (subunit A); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.661
PP_3125
Putative transcriptional regulator (Cro/CI family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.559
PP_2792
Homologs of previously reported genes of unknown function.
   
  
 0.527
yjiY
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Cellularprocesses : Adaptations to atypical conditions.
  
     0.527
PP_2790
Sigma-54 dependent sensory box protein.
   
  
 0.519
PP_2795
AMP-binding domain protein.
   
  
 0.488
PP_2793
Acyl-CoA dehydrogenase family protein.
      
 0.487
PP_2791
Aminoglycoside phosphotransferase.
   
  
 0.475
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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