STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3133Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (488 aa)    
Predicted Functional Partners:
PP_3141
Glycosyl transferase, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
 
  
 0.988
PP_3384
Gluconate 2-dehydrogenase gamma subunit; Function of strongly homologous gene; enzyme; Energy metabolism.
 
 
 0.806
PP_5588
Homologs of previously reported genes of unknown function; Unknown function.
       0.773
PP_3134
Homologs of previously reported genes of unknown function.
  
    0.731
PP_3135
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.727
PP_3137
Glycosyl transferase, group 2 family protein.
  
    0.725
PP_3136
Putative O-acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.722
PP_3138
VirK domain protein.
  
    0.699
PP_1661
Putative Dehydrogenase subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.687
PP_3132
Putative Polysaccharide transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.648
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.