Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3138VirK domain protein. (333 aa)    
Predicted Functional Partners:
PP_3135
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.924
PP_3137
Glycosyl transferase, group 2 family protein.
 
    0.790
PP_3136
Putative O-acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.754
PP_3134
Homologs of previously reported genes of unknown function.
  
    0.751
ygaU
Regulator of murein cross-linking; Function of homologous gene experimentally demonstrated in an other organism; regulator; Unknown function.
      
 0.741
PP_1795
Homologs of previously reported genes of unknown function.
      
 0.740
PP_2634
Putative Cellulose synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.740
PP_1749
GNAT family acetyltransferase; Function experimentally demonstrated in the studied genus; enzyme; Central intermediary metabolism.
      
 0.709
treSA
Trehalose synthase A; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Sugars.
      
 0.708
PP_3133
Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.699
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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