Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_3140Glycosyl transferase, group 2 family protein. (395 aa)    
Predicted Functional Partners:
PP_3139
Glycosyl transferase, group 1 family protein.
 
  
 0.962
PP_3141
Glycosyl transferase, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
 
   
 0.919
PP_3137
Glycosyl transferase, group 2 family protein.
 
   
 0.893
PP_3135
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.744
PP_3132
Putative Polysaccharide transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.739
bcsB
Cellulose synthase and translocator subunit; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
 
 0.664
PP_3136
Putative O-acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.664
PP_3142
Putative Sugar transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.644
PP_3134
Homologs of previously reported genes of unknown function.
  
  
 0.625
PP_3138
VirK domain protein.
  
    0.621
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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